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Hosomi K, Maruyama S, Matsuoka T, Furuta M, Tojima Y, Uchiyama K, Morita M, Kawashima H, Kobayashi T, Kunisawa J (2025) Metabolite-mediated interactions and direct contact between Fusobacterium varium and Faecalibacterium prausnitzii. Microbiome 13(1):175. PMID: 40721806. doi: 10.1186/s40168-025-02168-w.

Yoshimura E, Hamada Y, Hatamoto Y, Nakagata T, Nanri H, Nakayama Y, Iwasaka C, Hayashi T, Suzuki I, Ando T, Ishikawa-Takata K, Tanaka S, Ono R, Araki M, Kawashima H, Chen YA, Park J, Hosomi K, Mizuguchi K, Kunisawa J, Miyachi M (2025) Effect of short-term dietary intervention on fecal serotonin, gut microbiome-derived tryptophanase, and energy absorption in a randomized crossover trial: an exploratory analysis. Gut Microbes 17(1):2514137. PMID: 40488306. doi: 10.1080/19490976.2025.2514137.

Chen YA, Kawashima H, Park J, Mohsen A, Hosomi K, Nakagata T, Murakami H, Nanri H, Miyachi M, Kunisawa J, Mizuguchi K (2025) NIBN Japan Microbiome Database, a database for exploring the correlations between human microbiome and health. Sci Rep 15(1):19640. PMID: 40467839. doi: 10.1038/s41598-025-04339-z.

Yoshii K, Node E, Furuta M, Tojima Y, Matsunaga A, Adachi J, Takaai N, Morita M, Hosomi K, Kunisawa J. (2025) Establishment of enterotype-specific antibodies for various diagnostic systems. Sci Rep 15(1):16814. PMID: 40368953. doi: 10.1038/s41598-025-01144-6.

Inoue R, Hosomi K, Park J, Sakaue H, Yumioka H, Kamitani H, Kinugasa Y, Harano K, Syauki AY, Doi M, Kageyama S, Yamamoto K, Mizuguchi K, Kunisawa J, Irie Y (2024) Clinical phenotypes associated with the gut microbiome in older Japanese people with care needs in a nursing home. Nutrients 16(22):3839. PMID: 39599625. doi: 10.3390/nu16223839.

Yoshimura E, Hamada Y, Hatamoto Y, Nakagata T, Nanri H, Nakayama Y, Hayashi T, Suzuki I, Ando T, Ishikawa-Takata K, Tanaka S, Ono R, Park J, Hosomi K, Mizuguchi K, Kunisawa J, Miyachi M (2024) Effects of energy loads on energy and nutrient absorption rates and gut microbiome in humans: a randomized crossover trial. Obesity (Silver Spring) 32(2):262-272. PMID: 37927202. doi: 10.1002/oby.23935.

Hosomi K, Saito M, Park J, Murakami H, Shibata N, Ando M, Nagatake T, Konishi K, Ohno H, Tanisawa K, Mohsen A, Chen YA, Kawashima H, Natsume-Kitatani Y, Oka Y, Shimizu H, Furuta M, Tojima Y, Sawane K, Saika A, Yonejima Y, Takeyama H, Matsutani A, Mizuguchi K, Miyachi M, Kunisawa J (2022) Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota. Nat Commun 13(1): 4477. PMID: 35982037. doi: 10.1038/s41467-022-32015-7.

Mohsen A, Chen YA, Osorio RSA, Higuchi C, Mizuguchi K (2022) Snaq: a dynamic snakemake pipeline for microbiome data analysis with QIIME2.  Front Bioinform 2: 893933. PMID: 36304319. doi: 10.3389/fbinf.2022.893933.

Park J, Hosomi K, Kawashima H, Chen YA, Mohsen A, Ohno H, Konishi K, Tanisawa K, Kifushi M, Kogawa M, Takeyama H, Murakami H, Kubota T, Miyachi M, Kunisawa J, Mizuguchi K (2022) Dietary vitamin B1 intake influences gut microbial community and the consequent production of short-chain fatty acids. Nutrients 14(10): 2078. PMID: 35631219. doi: 10.3390/nu14102078.