Microbiome sequence data │ NIBN JMD (Japan Microbiome Database)

The microbiota sequence data used in the papers have been deposited in the DDBJ Sequence Read Archive (DRA) of the National Institute of Genetics and can be downloaded from the link below.

Sampling place	Number of samples	BioProject	Publications
Minamiuonuma, Niigata	667	PRJDB10528	Park et al (2021) BMC Microbiology 21: 151 Hosomi et al (2022) Nature Communications 13: 4477 Chen et al (2025) Scientific Reports 15: 19640
Shunjuku, Tokyo	367	PRJDB10526	Park et al (2021) BMC Microbiology 21: 151 Park et al (2022) Nutrients 14: 2078 Park et al (2023) Microorganisms 11: 1892 Chen et al (2025) Scientific Reports 15: 19640
Shunjuku, Tokyo	115	PRJDB10527	Park et al (2021) BMC Microbiology 21: 151 Chen et al (2025) Scientific Reports 15: 19640
Minato, Tokyo	13	PRJDB20609	Chen et al (2025) Scientific Reports 15: 19640
Atsugi, Kanagawa	98	PRJDB14457	Sawane et al (2022) Microorganisms 10: 2169 Chen et al (2025) Scientific Reports 15: 19640
Chuo, Yamanashi	258	PRJDB15701	Matsuoka et al (2022) BMC Nutrition 8: 23 Maruyama et al (2022) Frontiers in Nutrition 9: 812469 Maruyama et al (2023) Microorganisms 11: 1246 Maruyama et al (2024) Frontiers in Nutrition 11: 1434150 Chen et al (2025) Scientific Reports 15: 19640 Hosomi et al (2025) Microbiome 13: 175
Osaka, Osaka	280	PRJDB10529	Park et al (2021) BMC Microbiology 21: 151 Sawane et al (2023) Microorganisms 10: 2169 Chen et al (2025) Scientific Reports 15: 19640
Suita, Osaka	37	PRJDB19975	Chen et al (2025) Scientific Reports 15: 19640
Shunan, Yamaguchi	401	PRJDB10530	Park et al (2021) BMC Microbiology 21: 151 Hosomi et al (2022) Nature Communications 13: 4477 Sawane et al (2022) Microorganisms 10: 2169 Chen et al (2025) Scientific Reports 15: 19640
Nagato, Yamaguchi	85	PRJDB20612	Chen et al (2025) Scientific Reports 15: 19640

Nucleotide sequence data of gut microbiome